The Impact of R53C Mutation on the Three-Dimensional Structure, Stability, and DNA-Binding Properties of the Human Hesx-1 Homeodomain

ChemBioChem ◽  
2002 ◽  
Vol 3 (8) ◽  
pp. 726 ◽  
Author(s):  
Isabel de la Mata ◽  
Jose L. Garcia ◽  
Carlos González ◽  
Margarita Menéndez ◽  
Javier Cañada ◽  
...  
2020 ◽  
Vol 2020 ◽  
pp. 1-9
Author(s):  
Bin Li ◽  
Bin Lu ◽  
Xuewen Guo ◽  
Shenghui Hu ◽  
Guihu Zhao ◽  
...  

Purpose. To screen out pathogenic genes in a Chinese family with congenital cataract and iris coloboma. Material and Methods. A three-generation family with congenital cataract and iris coloboma from a Han ethnicity was recruited. DNA was extracted from peripheral blood samples collected from all individuals in the family. Whole exon sequencing was employed for screening the disease-causing gene mutations in the proband, and Sanger sequencing was used for other members of the family and a control group of 500 healthy individuals. Bioinformatics analysis and three-dimensional structure predictions were used to predict the impact of amino acid changes on protein structure and function. Results. The candidate genes of cataract and iris coloboma were successfully screened out. A heterozygote mutation, CRYGD c.70C>A (p.P24T), was identified as cosegregating with congenital cataracts, while another heterozygous mutation, WFS1 c.1514G>C (p.C505S), which had not been reported previously, cosegregated with congenital iris coloboma. Bioinformatic analyses and three-dimensional structure prediction proved that the three-dimensional structures of WFS1 p.C505S and CRYGD p.P24T changed markedly and may contribute significantly to iris coloboma and congenital cataract, respectively. Conclusions. We report a novel mutation, WFS1 p.C505S, and a known mutation, CRYGD p.P24T, that cosegregate with iris coloboma and congenital cataract, respectively, in a Chinese family. This is the first time the association of WFS1 p.C505S with iris coloboma has been demonstrated, although CRYGD p.P24T has been widely reported as being associated with congenital cataract, especially in the Eastern Asian population. These findings may have future therapeutic benefit for the diagnosis of iris coloboma and congenital cataract. The results may also be relevant in further studies aiming to investigate the molecular pathogenesis of iris coloboma and congenital cataract.


2021 ◽  
Author(s):  
Safoura Khamse ◽  
Zahra Jafarian ◽  
Ali Bozorgmehr ◽  
Mostafa Tavakoli ◽  
Hossein Afshar Iranian ◽  
...  

Abstract Across human protein-coding genes, PRKACB (Protein Kinase CAMP-Activated Catalytic Subunit Beta) contains one of the longest GCC-repeats, and is predominantly expressed in the brain. Here we studied this STR in 300 human subjects, consisting of late-onset neurocognitive disorder (NCD) (N = 150) and controls (N = 150). We also studied the impact of this STR on the three-dimensional structure of DNA. While the PRKACB GCC-STR was strictly monomorphic at 7-repeats, we detected two 7/8 genotypes only in the NCD group. In comparison to all other lengths, (GCC)7 had the least effect on the three-dimensional structure of DNA, evidenced by minimal divergence between 0 and 7-repeats (divergence score = 0.04) and significant divergence between 0 and 8 repeats (divergence score = 0.50). A similar inert effect to the GCC-repeat was not detected in other classes of STRs such as GA and CA repeats. In conclusion, we report monomorphism of an exceptionally long GCC repeat in the PRKACB gene in human, its inert effect on DNA structure, and divergence in two cases of late-onset NCD. This is the first indication of natural selection for an exceptionally long monomorphic GCC-repeat, which probably evolved to function as an “epigenetic knob”, without changing the regional DNA structure.


1997 ◽  
Vol 270 (3) ◽  
pp. 496-510 ◽  
Author(s):  
François Penin ◽  
Christophe Geourjon ◽  
Roland Montserret ◽  
Anja Böckmann ◽  
Anne Lesage ◽  
...  

Biochemistry ◽  
1997 ◽  
Vol 36 (36) ◽  
pp. 10846-10856 ◽  
Author(s):  
Xiaolin Huang ◽  
Joseph J. Barchi, ◽  
Feng-Di T. Lung ◽  
Peter P. Roller ◽  
Peter L. Nara ◽  
...  

Biochemistry ◽  
1999 ◽  
Vol 38 (37) ◽  
pp. 11961-11972 ◽  
Author(s):  
Lin-Long Xue ◽  
Yun-Hua Wang ◽  
Yi Xie ◽  
Ping Yao ◽  
Wen-Hu Wang ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document